{
  "_id": "6a103ed1acfb0bcc41c9cace",
  "Package": "phyloraster",
  "Title": "Evolutionary Diversity Metrics for Raster Data",
  "Version": "2.3.0",
  "Authors@R": "c(\nperson(\"Gabriela\", \"Alves-Ferreira\", , \"gabriela-alves77@hotmail.com\", role = c(\"aut\", \"cre\", \"cph\"),\ncomment = c(ORCID = \"0000-0001-5661-3381\")),\nperson(c(\"Flávio\", \"M.\", \"M.\"), \"Mota\", , \"flaviomoc@gmail.com\", role = \"aut\",\ncomment = c(ORCID = \"0000-0002-0308-7151\")),\nperson(c(\"Neander\", \"Marcel\"), \"Heming\", , \"neanderh@yahoo.com.br\", role = \"aut\",\ncomment = c(ORCID = \"0000-0003-2461-5045\"))\n)",
  "Description": "Phylogenetic Diversity (PD, Faith 1992), Evolutionary\nDistinctiveness (ED, Isaac et al. 2007), Phylogenetic Endemism\n(PE, Rosauer et al. 2009; Laffan et al. 2016), and Weighted\nEndemism (WE, Laffan et al. 2016) for presence-absence raster.\nFaith, D. P. (1992) <doi:10.1016/0006-3207(92)91201-3> Isaac,\nN. J. et al. (2007) <doi:10.1371/journal.pone.0000296> Laffan,\nS. W. et al. (2016) <doi:10.1111/2041-210X.12513> Rosauer, D.\net al. (2009) <doi:10.1111/j.1365-294X.2009.04311.x>.",
  "License": "GPL (>= 3)",
  "URL": "https://CRAN.R-project.org/package=phyloraster,\nhttps://github.com/gabferreira/phyloraster,\nhttps:https://gabferreira.github.io/phyloraster/,\nhttps://doi.org/10.1111/ecog.06902",
  "BugReports": "https://github.com/gabferreira/phyloraster/issues",
  "VignetteBuilder": "knitr",
  "Config/testthat/edition": "2",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.3",
  "Config/pak/sysreqs": "libgdal-dev gdal-bin libgeos-dev libproj-dev\nlibsqlite3-dev",
  "Repository": "https://gabferreira.r-universe.dev",
  "Date/Publication": "2026-02-10 15:44:27 UTC",
  "RemoteUrl": "https://github.com/gabferreira/phyloraster",
  "RemoteRef": "HEAD",
  "RemoteSha": "0cff9770079b51f885f00939fcf51cc0bad29e0e",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-11 09:02:43 UTC",
    "User": "root"
  },
  "Author": "Gabriela Alves-Ferreira [aut, cre, cph] (ORCID:\n<https://orcid.org/0000-0001-5661-3381>),\nFlávio M. M. Mota [aut] (ORCID:\n<https://orcid.org/0000-0002-0308-7151>),\nNeander Marcel Heming [aut] (ORCID:\n<https://orcid.org/0000-0003-2461-5045>)",
  "Maintainer": "Gabriela Alves-Ferreira <gabriela-alves77@hotmail.com>",
  "MD5sum": "f78d5f2bbbccb8a9a893c1c219dbe251",
  "_user": "gabferreira",
  "_type": "src",
  "_file": "phyloraster_2.3.0.tar.gz",
  "_fileid": "a9145ef96fdb1bd0279e79454f01effa71a2bdb72762d1dccfeaf7f20bf1a6d0",
  "_filesize": 1342684,
  "_sha256": "a9145ef96fdb1bd0279e79454f01effa71a2bdb72762d1dccfeaf7f20bf1a6d0",
  "_created": "2026-05-11T09:02:43.000Z",
  "_published": "2026-05-22T11:32:33.326Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77371069001,
      "time": 174,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "6914434752"
    },
    {
      "job": 77371069217,
      "time": 193,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6914443727"
    },
    {
      "job": 77371069087,
      "time": 143,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "6914418750"
    },
    {
      "job": 77371069045,
      "time": 172,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6914426034"
    },
    {
      "job": 77371068385,
      "time": 240,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6914373886"
    },
    {
      "job": 77371068527,
      "time": 132,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7159472398"
    },
    {
      "job": 77371069596,
      "time": 526,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "6914552992"
    },
    {
      "job": 77371069745,
      "time": 504,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "6914545567"
    },
    {
      "job": 77371069377,
      "time": 114,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6914415139"
    }
  ],
  "_buildurl": "https://github.com/r-universe/gabferreira/actions/runs/25660489097",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/gabferreira/phyloraster",
  "_commit": {
    "id": "0cff9770079b51f885f00939fcf51cc0bad29e0e",
    "author": "gabferreira <gaferreira@uesc.br>",
    "committer": "gabferreira <gaferreira@uesc.br>",
    "message": "cran instalation of the package on the vignette\n",
    "time": 1770738267
  },
  "_maintainer": {
    "name": "Gabriela Alves-Ferreira",
    "email": "gabriela-alves77@hotmail.com",
    "login": "gabferreira",
    "orcid": "0000-0001-5661-3381",
    "uuid": 70015808
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.10",
      "role": "Depends"
    },
    {
      "package": "ape",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "purrr",
      "role": "Imports"
    },
    {
      "package": "SESraster",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "terra",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "maps",
      "role": "Suggests"
    },
    {
      "package": "phylobase",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 2.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "gabferreira",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-07",
      "n": 6
    }
  ],
  "_tags": [],
  "_stars": 10,
  "_contributors": [
    {
      "user": "gabferreira",
      "count": 306,
      "uuid": 70015808
    },
    {
      "user": "hemingnm",
      "count": 39,
      "uuid": 31964343
    },
    {
      "user": "hadley",
      "count": 1,
      "uuid": 4196
    }
  ],
  "_userbio": {
    "uuid": 70015808,
    "type": "user",
    "name": "Gabriela Alves Ferreira",
    "description": "Post Doctoral Researcher at UNESP"
  },
  "_downloads": {
    "count": 221,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/phyloraster"
  },
  "_devurl": "https://github.com/gabferreira/phyloraster",
  "_searchresults": 39,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/phyloraster.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/gabferreira/phyloraster",
  "_realowner": "gabferreira",
  "_cranurl": true,
  "_releases": [
    {
      "version": "2.0.1",
      "date": "2023-11-28"
    },
    {
      "version": "2.1.0",
      "date": "2024-03-19"
    },
    {
      "version": "2.2.0",
      "date": "2025-02-28"
    },
    {
      "version": "2.3.0",
      "date": "2026-02-16"
    }
  ],
  "_exports": [
    ".end.type",
    ".rast.pe.B",
    "arg.check",
    "canape.rast",
    "delta.grid",
    "df2rast",
    "geo.phylo",
    "geo.phylo.ses",
    "inv.range",
    "load.data.rosauer",
    "phylo.pres",
    "range_size",
    "rast.ed",
    "rast.ed.ses",
    "rast.pd",
    "rast.pd.ses",
    "rast.pe",
    "rast.pe.ses",
    "rast.sr",
    "rast.we",
    "rast.we.ses",
    "shp2rast",
    "species.ed",
    "species.tip.length",
    "tip.root.path"
  ],
  "_datasets": [
    {
      "name": "dataR",
      "title": "Presence-absence of 33 Australian tree frogs (Rosauer 2017)",
      "object": "dataR",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Longitude",
        "Latitude",
        "Litoria_revelata",
        "Litoria_rothii",
        "Litoria_longirostris",
        "Litoria_dorsalis",
        "Litoria_rubella",
        "Litoria_inermis",
        "Litoria_pallida",
        "Litoria_latopalmata",
        "Litoria_tornieri",
        "Litoria_nasuta",
        "Litoria_nigrofrenata",
        "Litoria_bicolor",
        "Litoria_fallax",
        "Litoria_genimaculata",
        "Litoria_wilcoxii",
        "Litoria_jungguy",
        "Litoria_andiirrmalin",
        "Litoria_caerulea",
        "Litoria_chloris",
        "Litoria_xanthomera",
        "Litoria_gracilenta",
        "Cyclorana_brevipes",
        "Cyclorana_novaehollandiae",
        "Cyclorana_cultripes",
        "Cyclorana_manya",
        "Litoria_alboguttata",
        "Cyclorana_longipes",
        "Nyctimystes_dayi",
        "Litoria_nannotis",
        "Litoria_lorica",
        "Litoria_rheocola",
        "Litoria_nyakalensis",
        "Litoria_infrafrenata"
      ],
      "rows": 2891,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "arg.check",
      "title": "Check for missing arguments in function call",
      "topics": [
        "arg.check"
      ]
    },
    {
      "page": "canape.rast",
      "title": "Classify Phylogenetic Endemism using rasters",
      "topics": [
        "canape.rast"
      ]
    },
    {
      "page": "dataR",
      "title": "Presence-absence of 33 Australian tree frogs (Rosauer 2017)",
      "topics": [
        "dataR"
      ]
    },
    {
      "page": "delta.grid",
      "title": "Delta of Diversity Metrics",
      "topics": [
        "delta.grid"
      ]
    },
    {
      "page": "df2rast",
      "title": "Transform a data.frame to raster",
      "topics": [
        "df2rast"
      ]
    },
    {
      "page": "geo.phylo",
      "title": "Calculate phylogenetic community metrics for raster data",
      "topics": [
        "geo.phylo"
      ]
    },
    {
      "page": "geo.phylo.ses",
      "title": "Calculate phylogenetic community metrics and their standardized effect sizes for raster data",
      "topics": [
        "geo.phylo.ses"
      ]
    },
    {
      "page": "inv.range",
      "title": "Calculate the inverse of range size",
      "topics": [
        "inv.range"
      ]
    },
    {
      "page": "load.data.rosauer",
      "title": "Load an example dataset with presence-absence data of 33 tree frogs and a phylogenetic tree for this species",
      "topics": [
        "load.data.rosauer"
      ]
    },
    {
      "page": "phylo.pres",
      "title": "Prepare rasters and phylogenetic tree to run community metrics",
      "topics": [
        "phylo.pres"
      ]
    },
    {
      "page": "range_size",
      "title": "Calculate range size for a set of species using a raster as input",
      "topics": [
        "range_size"
      ]
    },
    {
      "page": "rast.ed",
      "title": "Calculate Evolutionary distinctiveness for raster data",
      "topics": [
        "rast.ed"
      ]
    },
    {
      "page": "rast.ed.ses",
      "title": "Standardized effect size for Evolutionary distinctiveness",
      "topics": [
        "rast.ed.ses"
      ]
    },
    {
      "page": "rast.pd",
      "title": "Calculate phylogenetic diversity for raster data",
      "topics": [
        "rast.pd"
      ]
    },
    {
      "page": "rast.pd.ses",
      "title": "Standardized effect size for Phylogenetic diversity",
      "topics": [
        "rast.pd.ses"
      ]
    },
    {
      "page": "rast.pe",
      "title": "Calculate phylogenetic endemism for raster data",
      "topics": [
        "rast.pe"
      ]
    },
    {
      "page": "rast.pe.ses",
      "title": "Standardized effect size for Phylogenetic endemism",
      "topics": [
        "rast.pe.ses"
      ]
    },
    {
      "page": "rast.sr",
      "title": "Calculate species richness for raster data",
      "topics": [
        "rast.sr"
      ]
    },
    {
      "page": "rast.we",
      "title": "Calculate weighted endemism for raster data",
      "topics": [
        "rast.we"
      ]
    },
    {
      "page": "rast.we.ses",
      "title": "Calculate weighted endemism standardized for species richness",
      "topics": [
        "rast.we.ses"
      ]
    },
    {
      "page": "shp2rast",
      "title": "Rasterize shapefile",
      "topics": [
        "shp2rast"
      ]
    },
    {
      "page": "species.ed",
      "title": "Calculate Evolutionary distinctiveness for each species",
      "topics": [
        "species.ed"
      ]
    },
    {
      "page": "species.tip.length",
      "title": "Compute species tip length",
      "topics": [
        "species.tip.length"
      ]
    },
    {
      "page": "tip.root.path",
      "title": "Compute tree edge lengths and node paths from root to each tip",
      "topics": [
        "tip.root.path"
      ]
    }
  ],
  "_pkglogo": "https://github.com/gabferreira/phyloraster/raw/HEAD/man/figures/logo.png",
  "_readme": "https://github.com/gabferreira/phyloraster/raw/HEAD/README.md",
  "_rundeps": [
    "ape",
    "cli",
    "digest",
    "glue",
    "lattice",
    "lifecycle",
    "magrittr",
    "nlme",
    "purrr",
    "Rcpp",
    "rlang",
    "SESraster",
    "terra",
    "vctrs"
  ],
  "_vignettes": [
    {
      "source": "phyloraster-vignette.Rmd",
      "filename": "phyloraster-vignette.html",
      "title": "Introduction to the phyloraster package and its functionalities",
      "author": "Gabriela Alves-Ferreira, Flávio Mota and Neander Heming",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Installation",
        "Data processing",
        "Analysis",
        "Null models",
        "CANAPE",
        "Citation",
        "References"
      ],
      "created": "2023-06-14 20:27:09",
      "modified": "2026-02-10 15:44:27",
      "commits": 23
    }
  ],
  "_score": 5.5910646070264995,
  "_indexed": true,
  "_nocasepkg": "phyloraster",
  "_universes": [
    "gabferreira"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "2.3.0",
      "date": "2026-05-11T09:05:16.000Z",
      "distro": "noble",
      "commit": "0cff9770079b51f885f00939fcf51cc0bad29e0e",
      "fileid": "bd9ab2167d4bec74383b618b43954ecd374938b95c19d15d93bf191aae5f8e04",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/gabferreira/actions/runs/25660489097"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "2.3.0",
      "date": "2026-05-11T09:05:41.000Z",
      "distro": "noble",
      "commit": "0cff9770079b51f885f00939fcf51cc0bad29e0e",
      "fileid": "f79b35ab3952c236d5e93909ad582865d029a1bfe69ba716dbfda6f778c6beb6",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/gabferreira/actions/runs/25660489097"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "2.3.0",
      "date": "2026-05-11T09:04:48.000Z",
      "commit": "0cff9770079b51f885f00939fcf51cc0bad29e0e",
      "fileid": "9729a46d80699d92803a54bc70874dd56c499342c7af5d525cd79b40ab2e10d8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/gabferreira/actions/runs/25660489097"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "2.3.0",
      "date": "2026-05-11T09:05:02.000Z",
      "commit": "0cff9770079b51f885f00939fcf51cc0bad29e0e",
      "fileid": "774eea93a083a6a4f92e56eb696459c68403d636a62517e31b15a4dfc226ad82",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/gabferreira/actions/runs/25660489097"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "2.3.0",
      "date": "2026-05-11T09:10:57.000Z",
      "commit": "0cff9770079b51f885f00939fcf51cc0bad29e0e",
      "fileid": "8b6db9330df1e5a00c65ff4d991b208b14a1e875cc26751de9866c7603267524",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/gabferreira/actions/runs/25660489097"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "2.3.0",
      "date": "2026-05-11T09:10:36.000Z",
      "commit": "0cff9770079b51f885f00939fcf51cc0bad29e0e",
      "fileid": "52aed15f186c7a89d236d69d9d2ba7979c2b78ca8ad09ea2dee26bfd4cfc6ce0",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/gabferreira/actions/runs/25660489097"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "2.3.0",
      "date": "2026-05-11T09:04:11.000Z",
      "commit": "0cff9770079b51f885f00939fcf51cc0bad29e0e",
      "fileid": "bd57eeb760b68ae68adf48d1c29c8954cd4f34c10ee280c59d4da6d7ef823ffc",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/gabferreira/actions/runs/25660489097"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "2.3.0",
      "date": "2026-05-22T11:32:17.000Z",
      "commit": "0cff9770079b51f885f00939fcf51cc0bad29e0e",
      "fileid": "7285965b60234a23d2ee0a7c01cfaaca730d4943c1ac5c752fc05f893dfe98a5",
      "status": "success",
      "buildurl": "https://github.com/r-universe/gabferreira/actions/runs/25660489097"
    }
  ]
}